4BIT: solution structure of cerebral dopamine neurotrophic factor (CDNF)
NMR · not available · released 23 Apr 2014 · Homo sapiens
How it was solved
- Method
- NMR
- Resolution
- not available
- Released
- 23 Apr 2014
- Clashscore
- 9.72
- Ramachandran outliers
- 2.58%
- Rotamer outliers
- 9.38%
What it led to
TopPDBLX: Every PDB crystallisation condition, parsed and indexed against his own JCSG Top96 taxonomy
Playbook · 15 Sep 2026
ChatPDB: A protein-structure-literate AI assistant for the Protein Data Bank: RAG for facts, a QLoRA-tuned model for behaviour
Playbook · 25 Jul 2026
ChemSage: A hybrid, chemically aware LLM for drug discovery: RAG for facts, a QLoRA-tuned model for behavior
Playbook · 1 Jul 2026
ChemSage: Vibe-Coding a Chemically Aware Drug-Discovery LLM on Local Hardware
Playbook · 30 Jun 2026
Do it yourself
Field Guide: Fundamentals
Capturing the Invisible: Understanding the Ångström in Structural Biology
Elevating Science Communication: Effortless 3D Structure Embedding with 3Dmol.js
Protein Structure and Redox Biology: NOS Linkages as Allosteric Switches
Hidden Chemistry in the Protein Data Bank: What Else Are We Missing?
Playbook
The Self-Driving Lab: How Automation and AI Are Redefining the Pace of Discovery
Tools
GOBSMACKED ↗
fold, dock, relax and annotate a protein-ligand complex on your own GPU, then find the crystal structure and g
CODSWALLOP ↗
every PDB entry for a protein family in one place: what was actually made, what it bound, what crystallised, a
TopPDBLX ↗
every crystallisation condition in the protein data bank, parsed and indexed: what worked, how often, and how
FlexAppeal ↗
Set up protein molecular dynamics without writing the script: every OpenMM option explained, a self-contained
BoltzMaker ↗
Build and analyze Boltz-2 protein structure prediction campaigns: a guided input wizard, YAML generation, and