Building a Comprehensive Protein Production, X-ray Crystallography, and Cryo-EM Laboratory from Scratch
9 Sep 2025 · updated 17 Sep 2026 · 2 min read
Building a Comprehensive Protein Production, X-ray Crystallography, and Cryo-EM Laboratory from Scratch
My project installing a Glacios 2 in 2023/4 at Incyte: construction, RF shielding, vibration isolation, and instrument install
- Infrastructure Integration: Unified design connects protein production to structure delivery, ensuring smooth workflows and consistent quality.
- Automation Excellence: AI-driven crystallization and robotics cut manual work, accelerating speed and reproducibility.
- Data Management: Powerful computing and smart pipelines turn massive cryo-EM datasets into precise structural insights.
- Personnel Development: Intensive 6–12 month training builds skilled operators and a culture of ongoing mastery.
- Quality Assurance: Standardized protocols secure reproducible results and uphold the lab’s precision ethos.
- Glacios 2 Cryo-TEM Specifications and Capabilities: Thermo Fisher Scientific, Electron Microscopy Products, 2024
- Cost-Benefit Analysis of Establishing a Cryo-EM Facility: Eureka PatSnap, Market Research Report, 2025
- Protein Crystallization Automation Systems: Formulatrix, Protein Crystallization Systems, 2024
- Best Practice Guidelines for Mid-Sized Cryo-EM Facilities: Frontiers in Molecular Biosciences, Van Andel Institute, 2023
- Automated Multi-Step Protein Purification Methods: Morimoto, D., et al., Protein Expression and Purification, 2024
Building a Comprehensive Protein Production, X-ray Crystallography, and Cryo-EM Laboratory from Scratch
Building a fully integrated structural biology laboratory has been one of my most ambitious and transformative projects. By bringing protein production, X‑ray crystallography, and cryo‑electron microscopy (cryo‑EM) under one roof, we erased the delays that once came from moving samples across facilities. This integration turned structural analysis into a seamless, iterative process—where insights could be tested and refined in real time.
Automation lies at the heart of this revolution. The Formulatrix NT8 v4 liquid handler dispenses crystallization drops as small as 10 nL with remarkable precision, while SONICC imaging reveals crystals that no optical microscope could ever detect—hidden in precipitate or mere submicron specks. Likewise, cryo‑EM has evolved from an artisan’s craft into an automated engine of discovery. Instruments such as the Thermo Scientific Glacios 2, paired with the Falcon 4i detector and EPU software, now deliver near‑atomic clarity with minimal manual intervention. Even vitrification—the once notoriously delicate step—has been reimagined by systems like the VitroJet, which replace manual blotting with real‑time controlled sample preparation.
Creating such a facility demands precision beyond the instruments themselves. Cryo‑EM rooms must meet ISO 8 cleanroom standards, hold temperatures steady within ±0.3 °C, humidity near 40%, and remain shielded from electromagnetic noise. The cost reflects this complexity: each advanced cryo‑EM setup can exceed $7 million, often doubled by facility modifications and support infrastructure.
AI‑driven protein prediction and machine‑learning‑guided drug discovery are reshaping biotechnology and pharmaceuticals. Establishing such a laboratory today is not just building a facility—it’s creating a platform for accelerated science, where automation, data integration, and human expertise converge to uncover biology’s finest details.